Sunflower Health Plan Concert Genetic Testing: Skeletal Dysplasia Rare Bone Disorders (PDF) Form
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Concert Genetic Testing: Skeletal Dysplasia and Rare Bone Disorders
V2.2023
Date of Last Revision: 3/1/2023
CONCERT GENETIC TESTING:
SKELETAL DYSPLASIA AND RARE
BONE DISORDERS
See Important Reminder at the end of this policy for important regulatory and legal
information.
OVERVIEW
Skeletal dysplasias are a category of rare genetic disorders that affect bones and joints and are
estimated to affect 2.4 per 10,000 births, and some forms of skeletal dysplasia can be suspected
based on prenatal ultrasound. There are more than 350 distinct skeletal disorders that have been
described, and some skeletal dysplasias can be lethal, often due to a significantly small rib cage
that restricts lung development. The osteogenesis imperfecta group of disorders are sometimes
classified as skeletal dysplasias, while other times they are considered bone fragility disorders.
Genetic testing has allowed for gene identification in more than two thirds of the skeletal
dysplasias. Testing allows for more precise diagnosis facilitating health care providers’ care
based on the established natural history of the individual disorder. For some skeletal dysplasias,
knowing the specific disease causing variant or variants can impart prognostic information. A
few skeletal dysplasias are currently amenable to pharmacologic therapy, though such therapies
may be reserved for patients with confirmed genetic diagnosis. The familial recurrence risk and
long term natural history differs based on the underlying genetic basis of disease.
POLICY REFERENCE TABLE
Below is a list of higher volume tests and the associated laboratories for each coverage criteria section.
This list is not all inclusive.
Coding Implications
This clinical policy references Current Procedural Terminology (CPT®). CPT® is a registered
trademark of the American Medical Association. All CPT codes and descriptions are copyrighted
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Concert Genetic Testing: Skeletal Dysplasia and Rare Bone Disorders
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2022, American Medical Association. All rights reserved. CPT codes and CPT descriptions are
from the current manuals and those included herein are not intended to be all-inclusive and are
included for informational purposes only. Codes referenced in this clinical policy are for
informational purposes only. Inclusion or exclusion of any codes does not guarantee coverage.
Providers should reference the most up-to-date sources of professional coding guidance prior to
the submission of claims for reimbursement of covered services
Coverage
Coverage
Criteria Sections
Criteria Sections
Osteogenesis
Osteogenesis
Imperfecta
Imperfecta
Example Tests (Labs)
Example Tests (Labs)
Osteogenesis imperfecta COL1A1 &
Osteogenesis imperfecta COL1A1 &
COL1A2 NGS Panel (CTGT Genetic
COL1A2 NGS Panel (CTGT Genetic
Testing)
Testing)
Common CPT
Common CPT
Codes
Codes
Common ICD
Common ICD
Codes
Codes
Ref
Ref
81406, 81408,
81406, 81408,
81479
81479
Q78.0, Z82.79 3
Q78.0, Z82.79 3
Osteogenesis Imperfecta Panel
Osteogenesis Imperfecta Panel
(PreventionGenetics)
(PreventionGenetics)
Osteogenesis Imperfecta NGS Panel -
Osteogenesis Imperfecta NGS Panel -
Dominant & Recessive NGS (CTGT
Dominant & Recessive NGS (CTGT
Genetic Testing)
Genetic Testing)
Skeletal Disorders Panel (Invitae)
Skeletal Disorders Panel (Invitae)
Skeletal Dysplasia Core & Extended NGS
Skeletal Dysplasia Core & Extended NGS
Panel (CTGT Genetic Testing)
Panel (CTGT Genetic Testing)
Multigene Panel
Multigene Panel
Analysis for
Analysis for
Skeletal Dysplasia
Skeletal Dysplasia
or Rare Bone
or Rare Bone
Disorder
Disorder
M85, Q77, Q78 1, 7, 8
M85, Q77, Q78 1, 7, 8
81400, 81401,
81400, 81401,
81402, 81403,
81402, 81403,
81404, 81405,
81404, 81405,
81406, 81407,
81406, 81407,
81408, 81479
81408, 81479
Comprehensive Skeletal Dysplasias and
Comprehensive Skeletal Dysplasias and
Disorders Panel (Blueprint Genetics)
Disorders Panel (Blueprint Genetics)
Other Covered Skeletal Dysplasias and Rare Bone Disorders
Other Covered Skeletal Dysplasias and Rare Bone Disorders
varies
varies
Other Covered
Other Covered
Skeletal
Skeletal
Dysplasias and
Dysplasias and
Rare Bone
Rare Bone
Disorders
Disorders
81400 through
81400 through
81408, 81479
81408, 81479
M85, Q77, Q78 2, 4, 5,
M85, Q77, Q78 2, 4, 5,
6
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OTHER RELATED POLICIES
This policy document provides coverage criteria for Genetic Testing for Skeletal Dysplasia and
Rare Bone Disorders. Please refer to:
●
●
●
Genetic Testing: Aortopathies and Connective Tissue Disorders for coverage criteria
related to Ehlers-Danlos syndrome and other connective tissue disorders.
Genetic Testing: Multisystem Inherited Disorders, Intellectual Disability, and
Developmental Delay for coverage criteria related to diagnostic testing for disorders that
affect multiple systems.
Genetic Testing: General Approach to Genetic Testing for coverage criteria related to
skeletal dysplasias and rare bone disorders that is not specifically discussed in this or
another non-general policy.
CRITERIA
It is the policy of health plans affiliated with Centene Corporation® that the specific genetic
testing noted below is medically necessary when meeting the related criteria:
OSTEOGENESIS IMPERFECTA
I. COL1A1 and COL1A2 variant analysis (81408, 81479) or multigene panel analysis
(81406, 81408, 81479) that includes COL1A1 and COL1A2 to establish or confirm a
diagnosis of osteogenesis imperfecta (OI) is considered medically necessary when:
A. The member/enrollee has any of the following:
1. Fractures with minimal or no trauma in the absence of other factors, such
as non-accidental trauma (NAT) or other known disorders of bone, OR
2. Short stature, often with bone deformity, OR
3. Blue/gray scleral hue, OR
4. Dentinogenesis imperfecta (DI), OR
5. Progressive, postpubertal hearing loss, OR
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6. Ligamentous laxity or other signs of connective tissue abnormality, OR
7. Family history of OI, typically with autosomal dominant inheritance, OR
8. Fractures of varying ages and stages of healing (often of the long bones),
OR
9. “Codfish” vertebrae, OR
10. Wormian bones, OR
11. Protrusio acetabuli, OR
12. Low bone mass or osteoporosis.
II. COL1A1 and COL1A2 variant analysis (81408, 81479) or multigene panel analysis
(81406, 81408, 81479) for osteogenesis imperfecta is considered investigational for all
other indications.
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MULTIGENE PANEL ANALYSIS FOR SKELETAL DYSPLASIA
OR RARE BONE DISORDER
I. Multigene panel analysis (81400, 81401, 81402, 81403, 81404, 81405, 81406, 81407,
81408, 81479) to confirm or establish a diagnosis of a skeletal dysplasia or a rare bone
disorder may be considered medically necessary when:
A. The member/enrollee displays one or more of the following clinical features of a
skeletal dysplasia:
1. Prenatal ultrasound showing shortening of the bones of the arms and legs
more than 3 standard deviations below the mean, OR
2. Prenatal ultrasound showing head circumference greater than 75th
percentile, OR
3. Prenatal ultrasound showing bone irregularities (e.g., bowed, fractured,
thickened, thin, undermineralized, etc.), OR
4. Prenatal ultrasound showing abnormal ribs or a small chest circumference,
OR
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5. Postnatal short stature with height or length less than 3rd percentile, AND
B. The differential diagnosis includes more than one type of skeletal dysplasia or
bone disorder.
II. Multigene panel analysis (81400, 81401, 81402, 81403, 81404, 81405, 81406, 81407,
81408, 81479) to confirm or establish a diagnosis of a skeletal dysplasia or a rare bone
disorder is considered investigational for all other indications.
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OTHER COVERED SKELETAL DYSPLASIA AND RARE BONE
DISORDERS
The following is a list of conditions that have a known genetic association. Due to their relative
rareness, it may be appropriate to cover these genetic tests to establish or confirm a diagnosis.
I. Genetic testing to establish or confirm one of the following skeletal dysplasias or rare bone
disorders to guide management is considered medically necessary when the
member/enrollee demonstrates clinical features* consistent with the disorder (the list is not
meant to be comprehensive, see II below):
A. Achondroplasia Group
1. Achondroplasia
2. Hypochondroplasia
3. Thanatophoric Dysplasia
B. Type II Collagenopathies
1. Hypochondrogenesis
2. Spondyloepiphyseal Dysplasia
C. Type XI Collagen Disorders
1. Fibrochondrogenesis
2. Otospondylomegaepiphyseal Dysplasia (OSMED)
D. Sulfation Disorders
1. Achondrogenesis IB
2. Atelosteogenesis II
3. Diastrophic Dysplasia
4. Chondrodysplasia with Congenital Joint Dislocations
E. Filamin Disorders and Similar Disorders
1. Atelosteogenesis Type I
2. Atelosteogenesis Type III
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3. Larsen Syndrome
4. Spondylo-Carpal-Tarsal Dysplasia
F. Short-Rib Dysplasias (with and without Polydactyly)
1. Chondroectodermal Dysplasia (Ellis-van Creveld (EVC))
2. Short-Rib Polydactyly Syndrome I, II, III, IV including Asphyxiating
Thoracic Dystrophy
G. Metaphyseal Dysplasias
1. Cartilage-Hair Hypoplasia
H. Spondylo-Epi-(Meta)-Physeal Dysplasia
1. SEMD, Short Limb Abnormal Calcification Type
I. Acromesomelic Disorders
1. Acromesomelic Dysplasia, Type Maroteaux
J. Mesomelic and Rhizo-Mesomelic Dysplasias
1. Langer Type (Homozygous Dyschondrosteosis)
K. Bent Bone Dysplasias
1. Campomelic Dysplasia
2. Stuve-Wiedemann Dysplasia
3. Bent Bone Dysplasia FGFR2 Type
L. Slender Bone Dysplasia
1. Microcephalic Osteodysplastic Primordial Dwarfism
2. Osteocraniostenosis
M. Neonatal Osteosclerotic Dysplasias
1. Bloomstrand Dysplasia
2. Caffey Disease (Infantile)
3. Raine Dysplasia
N. Increased Bone Density Group
1. Osteopetrosis
O. Abnormal Mineralization Group
1. Hypophosphatasia (also in Metabolic Policy)
P. Multiple Epiphyseal Dysplasia and Pseudoachondroplasia Group
1. Multiple Epiphyseal Dysplasia (MED) - Autosomal Dominant
2. Multiple Epiphyseal Dysplasia (MED) - Autosomal Recessive
3. Stickler Syndrome
Q. Hereditary Multiple Osteochondromas
II. Genetic testing to establish or confirm the diagnosis of all other skeletal dysplasias or rare
bone disorders not specifically discussed within this or another medical policy will be
evaluated by the criteria outlined in General Approach to Genetic Testing (see policy for
coverage criteria).
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*Clinical features for a specific disorder may be outlined in resources such as GeneReviews, OMIM, National Library
of Medicine, Genetics Home Reference, or other scholarly source.
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NOTES AND DEFINITIONS
1. Close relatives include first, second, and third degree blood relatives:
a. First-degree relatives are parents, siblings, and children
b. Second-degree relatives are grandparents, aunts, uncles, nieces, nephews,
grandchildren, and half siblings
c. Third-degree relatives are great grandparents, great aunts, great uncles, great
grandchildren, and first cousins
2. Non-accidental Trauma (NAT) refers to injury that is purposely inflicted upon a child
(e.g. child abuse). NAT often occurs as injury to the skin and soft, but approximately a
third of NATs are fractures.
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CLINICAL CONSIDERATIONS
Osteogenesis Imperfecta versus Non-accidental trauma (NAT)
GeneReviews is an expert-authored review of current literature on a genetic disease, and goes
through a rigorous editing and peer review process before being published online. GeneReviews
is an expert-authored review of current literature on a genetic disease, and goes through a
rigorous editing and peer review process before being published online. The discussion of non-
accidental trauma is as follows:
OI should be distinguished from child physical abuse/non-accidental trauma (NAT). The
prevalence of physical abuse is much greater than the prevalence of OI, and on rare occasions,
the two can be present concurrently. Patient history, family history, physical examination,
radiographic imaging, fracture investigation, and the clinical course all contribute to
distinguishing OI from NAT. The overlap in clinical features includes multiple or recurrent
fractures, fractures that do not match the history of trauma, and the finding of fractures of
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varying ages and at different stages of healing. Rib fractures are much more common in NAT
than in osteogenesis imperfecta.
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BACKGROUND AND RATIONALE
Osteogenesis Imperfecta
GeneReviews: COL1A1/2 Osteogenesis Imperfecta
GeneReviews is an expert-authored review of current literature on a genetic disease, and goes
through a rigorous editing and peer review process before being published online. The
recommended diagnostic testing for osteogenesis imperfecta is as follows:
COL1A1/2 osteogenesis imperfecta (OI) should be suspected in individuals with the following
clinical, radiographic, and laboratory features.
●
●
●
●
●
●
●
Fractures with minimal or no trauma in the absence of other factors, such as non-
accidental trauma (NAT) or other known disorders of bone
Short stature or stature shorter than predicted based on stature of unaffected family
members, often with bone deformity
Blue/gray scleral hue
Dentinogenesis imperfecta (DI)
Progressive, postpubertal hearing loss
Ligamentous laxity and other signs of connective tissue abnormality
Family history of OI, usually consistent with autosomal dominant inheritance
Radiographic features of OI change with age. The major findings include the following:
●
●
●
●
Fractures of varying ages and stages of healing, often of the long bones but may also
rarely involve ribs and skull. Metaphyseal fractures can be seen in a very small number of
children with OI. Rib fractures are much more common in NAT than in OI.
"Codfish" vertebrae, which are the consequence of spinal compression fractures, seen
more commonly in adults.
Wormian bones, defined as "sutural bones which are 6 mm by 4 mm (in diameter) or
larger, in excess of ten in number, with a tendency to arrange in a mosaic pattern."
Wormian bones are suggestive of but not pathognomonic for OI.
Protrusio acetabuli, in which the socket of the hip joint is too deep and the acetabulum
bulges into the cavity of the pelvis causing intrapelvic protrusion of the acetabulum.
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● Low bone mass or osteoporosis detected by dual energy x-ray absorptiometry (DEXA).
Bone density can be normal, especially in individuals with OI type I, as DEXA measures
mineral content rather than collagen.
Laboratory features
● Serum concentrations of vitamin D, calcium, phosphorous, and alkaline phosphatase are
typically normal; however, alkaline phosphatase may be elevated acutely in response to
fracture and rare instances of abnormally low alkaline phosphatase levels have been
noted anecdotally in severe OI.
Analysis of type 1 collagen synthesized in vitro by culturing dermal fibroblasts obtained
from a small skin biopsy reflects the structure and quantity of the collagen. The
sensitivity of biochemical testing is approximately 90% in individuals with clinically
confirmed OI. Biochemical analysis is essentially no longer used clinically with the
advances in molecular diagnostics.
●
“A multigene panel that includes COL1A1, COL1A2, and other genes of interest is most likely to
identify the genetic cause of the condition at the most reasonable cost while limiting
identification of variants of uncertain significance and variants in genes that do not explain the
underlying phenotype.”
Multigene Panel Analysis for Skeletal Dysplasia or Rare Bone Disorder
Krakow et al 2009
A guideline for prenatal diagnosis of fetal skeletal dysplasias (Krakow, Lachman, Rimoin, 2009)
recommends the follow criteria:
● Fetuses with long bone measurements at or less than the 5th centile or >3 SD below the
mean should be evaluated in a center with expertise in the recognition of skeletal
dysplasias. If the patient cannot travel, arrangements may be able to be made for
evaluation of ultrasound videotapes or hard copy images.
The following fetal ultrasound measurements should be visualized and plotted against
normative values: fetal cranium (biparietal diameter and head circumference), facial
profile, mandible, clavicle, scapula, chest circumference, vertebral bodies, all fetal long
bones, and the hands and feet. Fetuses with long bone parameters >3 SD below the mean
should be strongly suspected of having a skeletal dysplasia, especially if the head
circumference is greater than the 75th centile
Lethality should be determined by chest circumference to abdominal circumference ratio
and/or femur length to abdominal circumference measurement ratio. A chest-to
abdominal circumference ratio of <0.6 or femur length to abdominal circumference ratio
●
●
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of 0.16 strongly suggests a perinatal lethal disorder, although there are exceptions. The
findings should be conveyed to the physicians caring for the patient and to the patient. (p.
5)
In addition, close attention should be paid to the shape and mineralization pattern of the fetal
calvarium and fetal skeleton (poor or ectopic mineralization). Determining the elements of the
skeleton that are abnormal, coupled with the findings of mineralization and shape of the bones
can aid in diagnosis. (p. 3)
American College of Medical Genetics and Genomics (ACMG)
For diagnosis of genetic causes of short stature, the American College of Medical Genetics
practice guideline for evaluation of short stature (Seaver et al, 2009) is as follows:
The definition most commonly used for short stature is height-for-age less than two
standard deviations below average for gender, which is demonstrated on the standard
growth curves as a length or height less than the 3rd centile. (p. 466)
Nikkel 2017
Nikkel (2017) indicated the value of multigene panels for skeletal dysplasias with the following:
● The use of multigene panels, using next generation sequence technology, has improved
our ability to quickly identify the genetic etiology, which can impact management. (p.
419)
One should ensure that a panel contains all the genes under consideration and there is
appropriate deletion/duplication analysis when such pathogenic changes are noted to
occur in the gene. (p. 420 to 421)
●
Other Covered Skeletal Dysplasia and Rare Bone Disorders
International Skeletal Dysplasia Society
The International Skeletal Dysplasia Society published an updated categorization of skeletal
dysplasias (Mortier, 2019).
This newest and tenth version of the Nosology comprises 461 different diseases that are
classified into 42 groups based on their clinical, radiographic, and/or molecular
phenotypes. Remarkably, pathogenic variants affecting 437 different genes have been
found in 425/461 (92%) of these disorders. By providing a reference list of recognized
entities and their causal genes, the Nosology should help clinicians achieve accurate
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diagnoses for their patients and help scientists advance research in skeletal biology. (p.
2393)
Reviews, Revisions, and Approvals
Policy developed
REFERENCES
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Revision
Date
03/23
Approval
Date
03/23
1. Seaver LH, Irons M; American College of Medical Genetics (ACMG) Professional
Practice and Guidelines Committee. ACMG practice guideline: genetic evaluation of
short stature [published correction appears in Genet Med. 2009 Oct;11(10):765]. Genet
Med. 2009;11(6):465-470. doi:10.1097/GIM.0b013e3181a7e8f8
2. Mortier GR, Cohn DH, Cormier-Daire V, et al. Nosology and classification of genetic
skeletal disorders: 2019 revision. Am J Med Genet A. 2019;179(12):2393-2419.
doi:10.1002/ajmg.a.61366
3. Steiner RD, Basel D. COL1A1/2 Osteogenesis Imperfecta. 2005 Jan 28 [Updated 2021
May 6]. In: Adam MP, Mirzaa GMArdinger HH, Pagon RA, et al., editors.
GeneReviews® [Internet]. Seattle (WA): University of Washington, Seattle; 1993-2023.
Available from: https://www.ncbi.nlm.nih.gov/books/NBK1295/
4. Adam MP, Ardinger HH, Pagon RA, et al., editors. GeneReviews® [Internet]. Seattle
(WA): University of Washington, Seattle; 1993-2023. Available from:
https://www.ncbi.nlm.nih.gov/books/NBK1116/
5. Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic
Medicine, Johns Hopkins University (Baltimore, MD). World Wide Web URL:
https://omim.org/
6. MedlinePlus [Internet]. Bethesda (MD): National Library of Medicine (US). Available
from: https://medlineplus.gov/genetics/
7. Nikkel SM. Skeletal Dysplasias: What Every Bone Health Clinician Needs to Know.
Curr Osteoporos Rep. 2017;15(5):419-424. doi:10.1007/s11914-017-0392-x
8. Krakow D, Lachman RS, Rimoin DL. Guidelines for the prenatal diagnosis of fetal
skeletal dysplasias. Genet Med. 2009;11(2):127-133.
doi:10.1097/GIM.0b013e3181971ccb
Important Reminder
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Concert Genetic Testing: Skeletal Dysplasia and Rare Bone Disorders
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This clinical policy has been developed by appropriately experienced and licensed health care
professionals based on a review and consideration of currently available generally accepted
standards of medical practice; peer-reviewed medical literature; government agency/program
approval status; evidence-based guidelines and positions of leading national health professional
organizations; views of physicians practicing in relevant clinical areas affected by this clinical
policy; and other available clinical information. The Health Plan makes no representations and
accepts no liability with respect to the content of any external information used or relied upon in
developing this clinical policy. This clinical policy is consistent with standards of medical
practice current at the time that this clinical policy was approved. “Health Plan” means a health
plan that has adopted this clinical policy and that is operated or administered, in whole or in part,
by Centene Management Company, LLC, or any of such health plan’s affiliates, as applicable.
The purpose of this clinical policy is to provide a guide to medical necessity, which is a
component of the guidelines used to assist in making coverage decisions and administering
benefits. It does not constitute a contract or guarantee regarding payment or results. Coverage
decisions and the administration of benefits are subject to all terms, conditions, exclusions and
limitations of the coverage documents (e.g., evidence of coverage, certificate of coverage, policy,
contract of insurance, etc.), as well as to state and federal requirements and applicable Health
Plan-level administrative policies and procedures.
This clinical policy is effective as of the date determined by the Health Plan. The date of posting
may not be the effective date of this clinical policy. This clinical policy may be subject to
applicable legal and regulatory requirements relating to provider notification. If there is a
discrepancy between the effective date of this clinical policy and any applicable legal or
regulatory requirement, the requirements of law and regulation shall govern. The Health Plan
retains the right to change, amend or withdraw this clinical policy, and additional clinical
policies may be developed and adopted as needed, at any time.
This clinical policy does not constitute medical advice, medical treatment or medical care. It is
not intended to dictate to providers how to practice medicine. Providers are expected to exercise
professional medical judgment in providing the most appropriate care, and are solely responsible
for the medical advice and treatment of members/enrollees. This clinical policy is not intended to
recommend treatment for members/enrollees. Members/enrollees should consult with their
treating physician in connection with diagnosis and treatment decisions.
Providers referred to in this clinical policy are independent contractors who exercise independent
judgment and over whom the Health Plan has no control or right of control. Providers are not
agents or employees of the Health Plan.
This clinical policy is the property of the Health Plan. Unauthorized copying, use, and
distribution of this clinical policy or any information contained herein are strictly prohibited.
Providers, members/enrollees and their representatives are bound to the terms and conditions
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expressed herein through the terms of their contracts. Where no such contract exists, providers,
members/enrollees and their representatives agree to be bound by such terms and conditions by
providing services to members/enrollees and/or submitting claims for payment for such services.
Note: For Medicaid members/enrollees, when state Medicaid coverage provisions conflict
with the coverage provisions in this clinical policy, state Medicaid coverage provisions take
precedence. Please refer to the state Medicaid manual for any coverage provisions pertaining to
this clinical policy.
Note: For Medicare members/enrollees, to ensure consistency with the Medicare National
Coverage Determinations (NCD) and Local Coverage Determinations (LCD), all applicable
NCDs, LCDs, and Medicare Coverage Articles should be reviewed prior to applying the criteria
set forth in this clinical policy. Refer to the CMS website at http://www.cms.gov for additional
information.
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