Sunflower Health Plan Concert Genetic Testing: Prenatal and Preconception Carrier Screening (PDF) Form
Procedure is not covered
Concert Genetic Testing: Prenatal and Preconception Carrier Screening
V2.2023
Date of Last Revision: 3/1/2023
CONCERT GENETIC TESTING:
PRENATAL AND PRECONCEPTION
CARRIER SCREENING
See Important Reminder at the end of this policy for important regulatory and legal
information.
OVERVIEW
There are more than 1,300 inherited recessive disorders (autosomal or X-linked) that affect 30
out of every 10,000 children. Some diseases have limited impact on either length or quality of
life, while others are uniformly fatal in infancy or childhood. By definition, autosomal recessive
disorders arise when both parents pass on disease-causing copies of genes to a child. X-linked
recessive conditions arise when a disease-causing version of a gene is on the X-chromosome and
is passed to a male child who only has one copy of the X-chromosome.
Carrier screening is performed to identify individuals at risk of having offspring with inherited
recessive or X-linked single-gene disorders. Carriers are typically asymptomatic but can pass
disease-causing variants to their offspring. Carrier screening may be performed in the prenatal or
preconception periods. Risk-based carrier screening is performed in individuals who have an
increased risk to be a carrier based on population carrier frequency, ethnicity, and/or family
history.
Expanded carrier screening (ECS) involves screening individuals or couples for disorders in
many genes simultaneously (up to 100s) by next-generation sequencing. ECS panels may screen
for diseases that are present with increased frequency in specific populations, but also include a
wide range of diseases for which the individual seeking testing is not at increased risk for
positive carrier status. The conditions included on ECS panels are not standardized and the
panels may include conditions that are not well understood and for which there are no existing
professional guidelines.
POLICY REFERENCE TABLE
Below are a list of higher volume tests and the associated laboratories for each coverage criteria
section. This list is not all inclusive.
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Concert Genetic Testing: Prenatal and Preconception Carrier Screening
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Coding Implications
This clinical policy references Current Procedural Terminology (CPT®). CPT® is a registered
trademark of the American Medical Association. All CPT codes and descriptions are copyrighted
2022, American Medical Association. All rights reserved. CPT codes and CPT descriptions are
from the current manuals and those included herein are not intended to be all-inclusive and are
included for informational purposes only. Codes referenced in this clinical policy are for
informational purposes only. Inclusion or exclusion of any codes does not guarantee coverage.
Providers should reference the most up-to-date sources of professional coding guidance prior to
the submission of claims for reimbursement of covered services.
Common
Common
CPT Codes
CPT Codes
Common ICD
Common ICD
Codes
Codes
Ref
Ref
81243, 81257,
81243, 81257,
81329, 81443
81329, 81443
O09, Z13,
O09, Z13,
Z31, Z34,
Z31, Z34,
Z36, Z84
Z36, Z84
4, 6, 7
4, 6, 7
Coverage Criteria
Coverage Criteria
Sections
Sections
Expanded Carrier
Expanded Carrier
Screening Panels
Screening Panels
Example Tests (Labs)
Example Tests (Labs)
Foresight Carrier Screen (Myriad)
Foresight Carrier Screen (Myriad)
Inheritest 500 Plus Panel (LabCorp)
Inheritest 500 Plus Panel (LabCorp)
GeneSeq Plus (LabCorp)
GeneSeq Plus (LabCorp)
Comprehensive Carrier Screening
Comprehensive Carrier Screening
(Invitae)
(Invitae)
Comprehensive Carrier Screen without
Comprehensive Carrier Screen without
X-linked Disorders (Invitae)
X-linked Disorders (Invitae)
Broad Carrier Screen (Invitae)
Broad Carrier Screen (Invitae)
Broad Carrier Screen without X-linked
Broad Carrier Screen without X-linked
Disorders (Invitae)
Disorders (Invitae)
Inheritest Comprehensive Panel
Inheritest Comprehensive Panel
(Labcorp)
(Labcorp)
QHerit™ Expanded Carrier Screen
QHerit™ Expanded Carrier Screen
(Quest Diagnostics)
(Quest Diagnostics)
Horizon 14 (Natera)
Horizon 14 (Natera)
Horizon 27 (Natera)
Horizon 27 (Natera)
Horizon 274 (Natera)
Horizon 274 (Natera)
Basic Carrier Screening
Basic Carrier Screening
Panels (Cystic Fibrosis,
Panels (Cystic Fibrosis,
Spinal Muscular Atrophy,
Spinal Muscular Atrophy,
Fragile X,
Fragile X,
Hemoglobinopathies, not
Hemoglobinopathies, not
more than 14 genes)
more than 14 genes)
Inheritest Core Panel (LabCorp)
Inheritest Core Panel (LabCorp)
Inheritest Carrier Screen, Society-
Inheritest Carrier Screen, Society-
guided Panel (14 Genes) (LabCorp)
guided Panel (14 Genes) (LabCorp)
Prenatal Carrier Panel (Quest
Prenatal Carrier Panel (Quest
Diagnostics)
Diagnostics)
Foresight Fundamental Panel (Myriad)
Foresight Fundamental Panel (Myriad)
Core Carrier Screen (Invitae)
Core Carrier Screen (Invitae)
Cystic Fibrosis Carrier Screening
Cystic Fibrosis Carrier Screening
81220, 81329,
81220, 81329,
81243, 81257
81243, 81257
O09, Z13,
O09, Z13,
Z31, Z34,
Z31, Z34,
Z36, Z84
Z36, Z84
4, 5
4, 5
2
O09, Z13,
Z31, Z36,
Z83.49
1, 2, 5,
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CFTR Known Familial
Variant Analysis
Targeted Variants: CFTR
(PreventionGenetics)
CFTR Sequencing and/or
Deletion/Duplication
Analysis, or Mutation
Panel
Cystic Fibrosis Complete Rare Variant
Analysis, Entire Gene Sequence (Quest
Diagnostics)
Cystic Fibrosis Gene Deletion or
Duplication (Quest Diagnostics)
Cystic Fibrosis (CF) Profile, 32
mutations, DNA Analysis (LabCorp)
Cystic Fibrosis Screen (Quest
Diagnostics)
81221
81223
81222
81220
CFTR Intron 9 PolyT and
TG Analysis (previously
called Intron 8 polyT/TG
Analysis)
CFTR Intron 8 Poly-T Analysis (Quest
Diagnostics)
81224
Spinal Muscular Atrophy Carrier Screening
SMN1 Targeted Variant
Analysis
Known Variant Testing-SMN1
(Nemours)
SMN1 Targeted Variant - 2 Variants
Test (GeneDx)
81337, 81403 O09, Z13,
Z31, Z34,
Z36, Z84
5, 9
SMN1 Sequencing and/or
Deletion/Duplication and
SMN2
Deletion/Duplication
Analysis
Spinal Muscular Atrophy Carrier Test
(Natera)
81329, 81336,
81401, 81405
Fragile X Syndrome Carrier Screening
FMR1 Repeat Analysis
Fragile X Syndrome, PCR with Reflex
to Southern Blot (LabCorp)
Fragile X Syndrome, PCR and Southern
Blot Analysis (LabCorp)
81243, 81244 O09, Z13,
Z31, Z34,
Z36, Z84
5, 12
Hemoglobinopathy Carrier Screening
HBA1, HBA2, or HBB
Targeted Variant
Analysis
Alpha-Globin Common Mutation
Analysis (Quest Diagnostics)
HBA1 Targeted Variant-Single Test
(GeneDx)
HBA2 Targeted Variant-Single Test
(GeneDx)
81257, 81258 O09, Z13,
Z31, Z34,
Z36, Z84
5
Targeted Variant-HBB
81361, 81362
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HBA1, HBA2, or HBB
Sequencing and/or
Deletion/Duplication
Analysis
(PreventionGenetics)
Alpha-Globin Gene Sequencing (Quest
Diagnostics)
81259, 81269,
81363, 81364
HBA1 Deletion/Duplication (GeneDx)
HBA2 Deletion/Duplication (GeneDx)
HBB Carrier-Full Gene Sequencing and
Deletion/Duplication (Invitae)
Ashkenazi Jewish Carrier Panel Testing
Ashkenazi Jewish Carrier
Panel Testing
Ashkenazi Jewish Panel (Quest
Diagnostics)
81412
5, 8
O09, Z13,
Z31, Z34,
Z36, Z84
Duchenne and Becker Muscular Dystrophy Carrier Screening
DMD Targeted Variant
Analysis
Targeted Variants-DMD
(PreventionGenetics)
DMD Sequencing and/or
Deletion/Duplication
Analysis
Duchenne/Becker MD (DMD) Gene
Sequencing (GeneDx)
Duchenne/Becker MD (DMD) Del/Dup
(GeneDx)
81408, 81403 O09, Z13,
Z31, Z34,
Z36, Z84
81161, 81408
10, 11
Genomic Unity DMD Gene Analysis
(Variantyx)
0218U
General Criteria for Targeted Carrier Screening
General Criteria for
Targeted Carrier
Screening
Varies
Z14, Z15, Z31 3, 4, 5
81174, 81190,
81200, 81205,
81209, 81242,
81247, 81248,
81250, 81251,
81253, 81254,
81289, 81401,
81402, 81403,
81404, 81405,
81406, 81407,
81408
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Date of Last Revision: 3/1/2023
OTHER RELATED POLICIES
This policy document provides coverage criteria for Prenatal and Preconception Carrier
Screening. Please refer to:
●
●
●
●
●
●
●
●
Genetic Testing: Prenatal Diagnosis (via amniocentesis, CVS, or PUBS) and Pregnancy
Loss for coverage related to prenatal and pregnancy loss diagnostic genetic testing intended
to diagnose genetic conditions following amniocentesis, chorionic villus sampling, or
pregnancy loss.
Genetic Testing: Noninvasive Prenatal Screening (NIPS) for coverage criteria related to
prenatal cell-free DNA screening tests.
Genetic Testing: Preimplantation Genetic Testing for coverage criteria related to genetic
testing of embryos prior to in vitro fertilization.
Genetic Testing: Multisystem Inherited Disorders, Intellectual Disability and
Developmental Delay for coverage criteria related to suspected multisystem genetic
conditions in the postnatal period.
Genetic Testing: Hearing Loss for coverage related to diagnostic genetic testing for
hereditary hearing loss.
Genetic Testing: Hematologic Conditions (non-cancerous) for coverage related to
diagnostic genetic testing for alpha-thalassemia and other hemoglobinopathies.
Genetic Testing: Metabolic, Endocrine, and Mitochondrial Disorders for coverage related
to diagnostic genetic testing for mitochondrial and other disorders.
Genetic Testing: General Approach to Genetic Testing for coverage criteria related to
carrier screening that is not specifically discussed in this or other non-general policies.
CRITERIA
It is the policy of health plans affiliated with Centene Corporation® that the specific genetic
testing noted below is medically necessary when meeting the related criteria:
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EXPANDED CARRIER SCREENING PANELS
I.
Expanded carrier screening panels (81243, 81257, 81329, 81443*) may be considered
medically necessary when:
A. The member/enrollee is considering pregnancy or is currently pregnant, AND
B. The panel includes the genes CFTR and SMN1.
II.
Expanded carrier screening panels (81243, 81257, 81329, 81443*) are considered
investigational for all other indications.
*Fragile X (81243) and spinal muscular atrophy (SMA) (81329) carrier screening may be billed along with 81443 if
performed separately from the remainder of the panel per CPT Code Book Guidelines.
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BASIC CARRIER SCREENING PANELS (Cystic fibrosis, Spinal
Muscular Atrophy, Fragile X, Hemoglobinopathies, not more than 14 genes)
Basic carrier screening panels (CFTR, SMN1/2, FMR1, HBB/HBA1/HBA2, but not more than 14
genes) (81220, 81329, 81243, 81257) should be evaluated not as a panel, but by the individual
test criteria described in this policy, including but not limited to:
I. Cystic fibrosis carrier screening
Spinal muscular atrophy carrier screening
II.
III.
Fragile X syndrome carrier screening
IV. Hemoglobinopathy carrier screening
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CYSTIC FIBROSIS CARRIER SCREENING
CFTR Known Familial Variant Analysis
I. Cystic fibrosis carrier screening via CFTR targeted mutation analysis for a known
familial mutation (81221) may be considered medically necessary when:
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A. The member/enrollee and/or the member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, AND
B. The member/enrollee has a close relative with a known pathogenic or likely
pathogenic variant in CFTR.
II. Cystic fibrosis carrier screening via CFTR targeted mutation analysis for a known
familial mutation (81221) is considered investigational for all other indications.
CFTR Sequencing, Deletion/Duplication Analysis, or Mutation Panel
I. Cystic fibrosis carrier screening via CFTR sequencing (81223), deletion/duplication
analysis (81222), or a mutation panel (81220) using at a minimum the ACMG-23 variant
panel, may be considered medically necessary when:
A. The member/enrollee and/or the member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, OR
B. The member’s/enrollee’s reproductive partner is a known carrier for cystic
fibrosis.
II. Cystic fibrosis carrier screening via CFTR sequencing (81223), deletion/duplication
analysis (81222), or a mutation panel (81220) using at a minimum the ACMG-23 variant
panel, is considered investigational for all other indications.
CFTR Intron 9 PolyT and TG Analysis (previously called Intron 8 polyT/TG
Analysis)
I. Analysis of the CFTR intron 9 polyT and TG regions (81224) for cystic fibrosis carrier
screening may be considered medically necessary when:
A. The member/enrollee and/or the member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, AND
B. The member/enrollee is known to have an R117H variant in the CFTR gene.
II. Analysis of the CFTR intron 9 polyT and TG regions (81224) for cystic fibrosis carrier
screening is considered investigational for all other indications.
Note: Refer to Genetic Testing for Multisystem Inherited Disorders, Intellectual Disability and Developmental
Delay for coverage criteria for genetic testing to establish a diagnosis of cystic fibrosis.
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SPINAL MUSCULAR ATROPHY CARRIER SCREENING
SMN1 Targeted Variant Analysis
I.
Spinal muscular atrophy (SMA) carrier screening via SMN1 targeted variant analysis
(81337, 81403) may be considered medically necessary when:
A. The member/enrollee and/or the member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, AND
B. The member/enrollee has a close relative with a known pathogenic or likely
pathogenic variant in SMN1.
II.
Spinal muscular atrophy (SMA) carrier screening via SMN1 targeted variant analysis
(81337, 81403) is considered investigational for all other indications.
SMN1 Sequencing and/or Deletion/Duplication and SMN2
Deletion/Duplication Analysis
I.
Spinal muscular atrophy (SMA) carrier screening via SMN1 sequencing and/or
deletion/duplication analysis and SMN2 deletion/duplication analysis (81329, 81336,
81401, 81405) is considered medically necessary when:
A. The member/enrollee and/or member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, OR
B. The member’s/enrollee’s reproductive partner is a known carrier for spinal
muscular atrophy.
II.
Spinal muscular atrophy (SMA) carrier screening via SMN1 sequencing and/or
deletion/duplication analysis and SMN2 deletion/duplication analysis (81329, 81336,
81401, 81405) is considered investigational for all other indications.
Note: Refer to Genetic Testing for Epilepsy, Neuromuscular, and Neurodegenerative Disorders for coverage criteria
for genetic testing to establish a diagnosis of spinal muscular atrophy (SMA).
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FRAGILE X SYNDROME CARRIER SCREENING
FMR1 Repeat Analysis
I.
Fragile X carrier screening via FMR1 CGG-trinucleotide repeat analysis (81243, 81244)
may be considered medically necessary when:
A. The member/enrollee has been diagnosed with premature ovarian insufficiency or
elevated follicle-stimulating hormone level before age 40 years, OR
B. The member/enrollee is considering a pregnancy or is currently pregnant, AND
1. The member/enrollee has one of the following:
a) Close relative with Fragile X syndrome (i.e., close relative has
more than 200 CGG repeats in the FMR1 gene), OR
b) Close relative who is a known carrier for Fragile X syndrome (i.e.,
close relative has between 55-200 CGG repeats in the FMR1
gene), OR
c) Close relative with unexplained intellectual disability,
developmental delay, or autism spectrum disorder, OR
d) Close relative diagnosed with premature ovarian insufficiency or
elevated follicle-stimulating hormone level before age 40 years.
II.
Fragile X carrier screening via FMR1 CGG-trinucleotide repeat analysis (81243, 81244)
is considered investigational for all other indications.
Note: Refer to Genetic Testing for Multisystem Inherited Disorders, Intellectual Disability and Developmental
Delay for coverage criteria for genetic testing to establish a diagnosis of fragile X syndrome.
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HEMOGLOBINOPATHY CARRIER SCREENING
HBA1, HBA2, or HBB Targeted Variant Analysis
I. Hemoglobinopathy carrier screening via HBA1, HBA2 (81257, 81258), or HBB (81361,
81362) targeted variant analysis may be considered medically necessary when:
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A. The member/enrollee and/or the member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, AND
B. The member/enrollee meets one of the following:
1. The member/enrollee has a close relative with a known pathogenic or
likely pathogenic variant in HBA1, HBA2, or HBB, OR
2. The member’s/enrollee’s reproductive partner is a known carrier of a
pathogenic or likely pathogenic variant in HBA1, HBA2, or HBB, OR
3. The member’s/enrollee’s reproductive partner is known to have a
diagnosis of a hemoglobinopathy, OR
4. The member’s/enrollee’s hematologic screening results (e.g., MCV, MCH,
CBC, hemoglobin electrophoresis, or dichlorophenol indophenol (DCIP))
are suggestive of or do not conclusively rule out a hemoglobinopathy.
II. Hemoglobinopathy carrier screening via HBA1, HBA2 (81257, 81258), or HBB (81361,
81362) targeted variant analysis is considered investigational for all other indications.
HBA1, HBA2, or HBB Sequencing and/or Deletion/Duplication Analysis
I. Hemoglobinopathy carrier screening via HBA1, HBA2 (81259, 81269), or HBB (81363,
81364) sequencing and/or deletion/duplication analysis may be considered medically
necessary when:
A. The member/enrollee and/or the member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, AND
B. The member’s/enrollee’s hematologic screening results (e.g., MCV, MCH, CBC,
hemoglobin electrophoresis, or dichlorophenol indophenol (DCIP)) are suggestive
of, or do not conclusively rule out, a hemoglobinopathy.
II. Hemoglobinopathy carrier screening via HBA1, HBA2 (81259, 81269), or HBB (81363,
81364) sequencing and/or duplication analysis is considered investigational for all other
indications.
Note: Refer to Genetic Testing for Hematologic Disorders (non-cancerous) for coverage criteria for genetic testing
to establish a diagnosis of a hemoglobinopathy.
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ASHKENAZI JEWISH CARRIER PANEL TESTING
I. Ashkenazi Jewish carrier panel testing (81412) may be considered medically necessary
when:
A. The member/enrollee and/or the member’s/enrollee’s reproductive partner is
considering pregnancy or is currently pregnant, AND
B. The member/enrollee is of Ashkenazi Jewish ancestry, AND
C. The panel includes, at a minimum, screening for carrier status for genetic
conditions associated with the following genes, as recommended by the American
College of Medical Genetics (ACMG):
1. Tay Sachs disease (HEXA)
2. Canavan disease (ASPA)
3. Cystic fibrosis (CFTR)
4. Familial dysautonomia (ELP1)
5. Bloom syndrome (BLM)
6. Fanconi anemia (FANCC)
7. Niemann-Pick disease (SMPD1)
8. Gaucher disease (GBA)
9. Mucolipidosis IV (MCOLN1)
Note: If only one partner is of Ashkenazi Jewish ancestry, then testing of that partner is considered medically
necessary. Testing of the other partner is considered medically necessary only if the result of testing of the
Ashkenazi Jewish partner is positive.
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DUCHENNE AND BECKER MUSCULAR DYSTROPHY
CARRIER SCREENING
DMD Targeted Variant Analysis
I. Duchenne and Becker muscular dystrophy carrier screening via DMD targeted variant
analysis (81408, 81403) may be considered medically necessary when:
A. The member/enrollee is considering pregnancy or is currently pregnant, AND
B. The member/enrollee has a close relative with a known pathogenic or likely
pathogenic variant in DMD.
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II. Duchenne and Becker muscular dystrophy carrier screening via DMD targeted variant
analysis (81408, 81403) is considered investigational for all other indications.
DMD Sequencing and/or Deletion/Duplication Analysis
I. Duchenne and Becker muscular dystrophy carrier screening via DMD sequencing and/or
deletion/duplication analysis (81161, 81408, 0218U) may be considered medically
necessary when:
A. The member/enrollee is considering pregnancy or is currently pregnant, AND
B. The member/enrollee has one of the following:
1. First- or second-degree male relative diagnosed with Duchenne or Becker
muscular dystrophy.
II. Duchenne and Becker muscular dystrophy carrier screening via DMD sequencing and/or
deletion/duplication analysis (81161, 81408, 0218U) is considered investigational for all
other indications.
Note: Refer to Genetic Testing for Epilepsy, Neuromuscular, and Neurodegenerative Disorders for coverage criteria
for genetic testing to establish a diagnosis of Duchenne or Becker muscular dystrophy.
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GENERAL CRITERIA FOR TARGETED CARRIER
SCREENING
NOTE: Each section in the policy reference table includes specific coverage criteria. For any prenatal or
preconception carrier screening test that does not have specific criteria above, refer to the following coverage criteria
to assess for medical necessity.
Targeted carrier screening is defined as a test that screens for a known mutation in one gene associated with a
specific genetic condition.
I. Carrier screening for a genetic disorder (81174, 81190, 81200, 81205, 81209, 81242,
81247, 81248, 81250, 81251, 81253, 81254, 81289, 81401, 81402, 81403, 81404, 81405,
81406, 81407, 81408) may be considered medically necessary when:
A. The member/enrollee is considering pregnancy or is currently pregnant, AND
B. The genetic disorder is a recessive condition with a childhood onset, AND
C. One of the following:
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1. The member/enrollee has a close relative with a known pathogenic or
likely pathogenic variant associated with the disorder, OR
2. The member’s/enrollee’s reproductive partner is a carrier for the genetic
disorder, OR
3. The member/enrollee or the member’s/enrollee’s reproductive partner are
members of a population known to have a carrier rate of 1% or higher for
the genetic condition, OR
4. The member/enrollee or the member’s/enrollee’s reproductive partner has
a first- or second-degree relative who is affected with the genetic disorder.
II. Carrier screening for a genetic disorder (81174, 81190, 81200, 81205, 81209, 81242,
81247, 81248, 81250, 81251, 81253, 81254, 81289, 81401, 81402, 81403, 81404, 81405,
81406, 81407, 81408) is considered investigational when the member/enrollee does not
meet any criteria above.
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NOTES AND DEFINITIONS
1. Close relatives include first, second, and third degree relatives on the same side of the
family:
a. First-degree relatives are parents, siblings, and children
b. Second-degree relatives are grandparents, aunts, uncles, nieces, nephews,
grandchildren, and half siblings
c. Third-degree relatives are great grandparents, great aunts, great uncles, great
grandchildren, and first cousins.
CLINICAL CONSIDERATIONS
“Negative” carrier screening results reduce, but do not eliminate, the chance of an individual
being a carrier for the condition(s) screened. Therefore, there is still a “residual risk” of being a
carrier for the condition(s) screened. The residual risk is the chance that the individual is still a
carrier based on a normal/negative carrier screen. The residual risk will vary depending on
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which test is performed, how many mutations are included for each condition, the patient’s
ethnicity, etc.
It is important to recognize that family history, ethnicity, and race are self-reported, and may not
be completely accurate, particularly in multi-ethnic and multi-racial societies.
When one member of a couple is at high risk of being a carrier for a certain condition due to
ancestry (e.g., Ashkenazi Jewish, French-Canadian, Cajun, etc.) or has a family history of a
condition, the high-risk partner should be offered screening. If the high-risk partner is found to
be a carrier, the other partner should then be offered screening.
Genetic counseling is strongly recommended for patients considering expanded carrier
screening.
BACKGROUND AND RATIONALE
Expanded Carrier Screening Panels
American College of Obstetricians and Gynecologists (ACOG)
The American College of Obstetricians and Gynecologists (ACOG) published practice bulletin
No. 690 (2017, reaffirmed 2020) regarding “Carrier Screening in the Age of Genomic
Medicine”, which made the following recommendations: “Ethnic-specific, panethnic, and
expanded carrier screening are acceptable strategies for pre pregnancy and prenatal carrier
screening. Each obstetrician–gynecologist or other health care provider or practice should
establish a standard approach that is consistently offered to and discussed with each patient,
ideally before pregnancy. After counseling, a patient may decline any or all carrier screening.”
(page e95) It was also recommended that: “All patients who are considering pregnancy or are
already pregnant, regardless of screening strategy and ethnicity, should be offered carrier
screening for cystic fibrosis and spinal muscular atrophy, as well as a complete blood count and
screening for thalassemias and hemoglobinopathies.” (p. e95)
American College of Medical Genetics and Genomics (ACMG), American College of
Obstetricians and Gynecologists (ACOG), the National Society of Genetic Counselors (NSGC),
the Perinatal Quality Foundation, and the Society of Maternal-Fetal Medicine (SMFM)
The American College of Medical Genetics and Genomics (ACMG), ACOG, the National
Society of Genetic Counselors (NSGC), the Perinatal Quality Foundation, and the Society of
Maternal-Fetal Medicine (SMFM) published a commentary discussing expanded carrier
screening in 2015 stating that “...women of reproductive age should ideally be offered carrier
screening before conception.” (p. 657)
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American College of Medical Genetics and Genomics (ACMG):
ACMG published a practice resource (2021) regarding screening for autosomal recessive and X-
linked conditions during pregnancy and preconception, which includes the following
recommendations:
● The phrase “expanded carrier screening” be replaced by “carrier screening”.
●
Adopting a more precise tiered system based on carrier frequency (p. 1796)
○ Tier 1: CF + SMA + Risk Based Screening
○
○
Tier 2: 1/100 carrier frequency or higher (includes Tier 1)
Tier 3: 1/200 carrier frequency or higher (includes Tier 2) includes X-
linked conditions
Tier 4: 1/200 carrier frequency or higher (includes Tier 3) genes/condition
will vary by lab
○
● All pregnant patients and those planning a pregnancy should be offered Tier 3
carrier screening. (p. 1797)
Tier 4 screening should be considered (p. 1797):
●
○ When a pregnancy stems from a known or possible consanguineous
relationship (second cousins or closer)
When a family or personal medical history warrants.
○
● Reproductive partners of pregnant patients and those planning a pregnancy may
be offered Tier 3 carrier screening for autosomal recessive conditions when
carrier screening is performed simultaneously with their partner."
ACMG does not recommend (p. 1797):
● Offering Tier 1 and/or Tier 2 screening without Tier 3, because these do not
provide equitable evaluation of all racial/ethnic groups.
Routine offering of Tier 4 panels.
●
Basic Carrier Screening Panels (Cystic Fibrosis, Spinal Muscular Atrophy, Fragile X,
Hemoglobinopathies, not more than 14 genes)
American College of Obstetricians and Gynecologists (ACOG)
ACOG published practice bulletin No. 691 (March 2017, reaffirmed 2020) and following
recommendations related to carrier screening (p. 2):
● Screening for spinal muscular atrophy should be offered to all individuals who are
considering pregnancy or are currently pregnant.
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●
●
●
Cystic fibrosis carrier screening should be offered to all individuals who are considering
pregnancy or are currently pregnant.
Fragile X premutation carrier screening is recommended for patients with a family
history of fragile X-related disorders or intellectual disability suggestive of fragile X
syndrome and who are considering pregnancy or are currently pregnant.
A complete blood count with red blood cell indices should be performed in all individuals
who are currently pregnant to assess not only their risk of anemia but also to allow
assessment for risk of a hemoglobinopathy. Ideally, this testing also should be offered to
women before pregnancy. A hemoglobin electrophoresis should be performed in addition
to a complete blood count if there is suspicion of hemoglobinopathy based on ethnicity
(African, Mediterranean, Middle Eastern, Southeast Asian, or West Indian descent). If
red blood cell indices indicate a low mean corpuscular hemoglobin or mean corpuscular
volume, hemoglobin electrophoresis also should be performed.
ACOG published practice bulletin No. 690 (March 2017, reaffirmed 2020) and following
recommendations related to carrier screening (p. 1):
All patients who are considering pregnancy or are already pregnant, regardless of screening
strategy and ethnicity, should be offered carrier screening for cystic fibrosis and spinal muscular
atrophy, as well as a complete blood count and screening for thalassemias and
hemoglobinopathies. Fragile X premutation carrier screening is recommended for women with a
family history of fragile X-related disorders or intellectual disability suggestive of fragile X
syndrome, or women with a personal history of ovarian insufficiency. Additional screening also
may be indicated based on family history or specific ethnicity.
Cystic Fibrosis Carrier Screening
CFTR Known Familial Analysis
ACOG published practice bulletin No. 691 (March 2017, reaffirmed 2020) and the following
recommendations related to carrier screening:
When both partners are unaffected, but one or both has a family history of cystic fibrosis -
Genetic counseling and medical record review should be performed to determine if CFTR
mutation analysis in the affected family member is available. Carrier screening should be offered
for both partners, with attention to ensure that the familial mutation is included in the
assessment. (p. 7)
CFTR Sequencing and/or Deletion/Duplication Analysis, or Mutation Panel
National Society of Genetic Counselors (NSGC)
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NSGC published recommendations in 2013 addressing carrier screening for cystic fibrosis. It is
recommended that: “Carrier testing for CF [cystic fibrosis] should be offered to all women of
reproductive age, regardless of ancestry; preferably pre-conceptionally. CF carrier testing should
also be offered…to partners of mutation carriers...” (p. 8)
American College of Obstetricians and Gynecologists (ACOG)
The American College of Obstetricians and Gynecologists (ACOG) published practice bulletin
No. 691 (2017, reaffirmed 2020) regarding “Carrier Screening Genetic Conditions”, which made
the following recommendations for cystic fibrosis carrier screening:
● Cystic fibrosis carrier screening should be offered to all women who are considering
pregnancy or are currently pregnant. (p. 1)
American College of Medical Genetics and Genomics (ACMG)
In 2001, ACMG made the following recommendation (Grody et al, 2001) :
● The Committee recommends that CF carrier screening be offered to non-Jewish
Caucasians and Ashkenazi Jews, and made available to other ethnic and racial groups
who will be informed of their detectability through educational brochures, the informed
consent process, and/or other efficient methods. For example, Asian-Americans and
Native-Americans without significant Caucasian admixture should be informed of the
rarity of the disease and the very low yield of the test in their respective populations.
Testing should be made available to African-Americans, recognizing that only about 50%
of at-risk couples will be detected. An educational brochure and a consent form which
recites this information as well as a sign-off for those choosing not to be tested after
reading these materials is being prepared by the Working Group on Patient Education and
Informed Consent. (p. 150)
● We recommend that preconception testing be encouraged whenever possible, although
we recognize that for practical purposes, testing will often occur in the prenatal setting.”
(p. 150)
● The Committee recommends that the R117H mutation be included in the test panel, while
recognizing that this will screen for male infertility as well as CF. Thus, to distinguish the
genotypes of R117H associated with CF from that associated with CBAVD, reflex testing
for the 5T/7T/9T variant is recommended only when the R117H mutation is positive. (p.
151)
In their 2020 technical standard for CFTR variant testing, the American College of Medical
Genetics and Genomics (ACMG) recommends a minimum number of mutations tested in the
CFTR gene if carrier testing is pursued: “For those laboratories who wish to continue using a
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targeted testing approach, the ACMG-23 variant panel remains as the minimum list of CFTR
variants that should be included.” (p. 5)
“The development of the ACMG-23 variant panel followed a careful analysis and
revision of the original ACMG-25 variant panel, which was a product of two National
Institutes of Health (NIH) consensus conferences (1997 and 1998), followed by a
Steering Committee made up of ACMG and ACOG representatives. This was the first
time professional organizations recommended population-based screening at the DNA
level for a genetic condition.
CFTR Intron 9 PolyT and TG Analysis (previously called Intron 8 polyT/TG Analysis)
American College of Medical Genetics and Genomics (ACMG), 2002
Per the ACMG Laboratory Quality Assurance (QA) Committee, they recommend that all R117H
positive results require reflex testing for the 5T/7T/9T variant in the polythymidine tract at intron
8 in CFTR gene. (Page 389)
Spinal Muscular Atrophy Carrier Screening
SMN1 Targeted Variant Analysis
American College of Obstetricians and Gynecologists (ACOG)
The American College of Obstetricians and Gynecologists (ACOG) published practice bulletin
No. 691 (2017) regarding “Carrier Screening for Genetic Conditions”, which made the following
recommendations (p. 597 to 598):
When an individual is found to be a carrier for a genetic condition, the individual’s relatives are
at risk of carrying the same mutation. Individuals with a positive family history of a genetic
condition should be offered carrier screening for the specific condition and may benefit from
genetic counseling.
SMN1 Sequencing and/or Deletion/Duplication and SMN2 Deletion/Duplication Analysis
American College of Obstetricians and Gynecologists (ACOG)
The American College of Obstetricians and Gynecologists (ACOG) published practice bulletin
No. 691 (March 2017, reaffirmed 2020) and the following recommendations (p. 2):
●
Screening for spinal muscular atrophy should be offered to all women who are
considering pregnancy or are currently pregnant.
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●
In patients with a family history of spinal muscular atrophy, molecular testing reports of
the affected individual and carrier testing of the related parent should be reviewed, if
possible, before testing. If the reports are not available, SMN1 deletion testing should be
recommended for the low-risk partner.
American College of Medical Genetics and Genomics (ACMG)
The American College of Medical Genetics and Genomics recommended the following on
carrier screening for spinal muscular atrophy (Prior, et al, 2008):
Because SMA is present in all populations, carrier testing should be offered to all couples
regardless of race or ethnicity. Ideally, the testing should be offered before conception or early in
pregnancy. The primary goal is to allow carriers to make informed reproductive choices. (p. 841)
Fragile X Syndrome Carrier Screening - FMR1 Repeat Analysis
American College of Obstetricians and Gynecologists (ACOG)
The American College of Obstetricians and Gynecologists (ACOG) published practice bulletin
No. 691 (2017) regarding “Carrier Screening for Genetic Conditions”, which made the following
recommendations (p. 2):
●
●
●
●
●
Fragile X premutation carrier screening is recommended for women with a family history
of fragile X-related disorders or intellectual disability suggestive of fragile X syndrome
and who are considering pregnancy or are currently pregnant.
If a woman has unexplained ovarian insufficiency or failure or an elevated follicle-
stimulating hormone level before age 40 years, fragile X carrier screening is
recommended to determine whether she has an FMR1 premutation.
All identified individuals with intermediate results and carriers of a fragile X premutation
or full mutation should be provided follow-up genetic counseling to discuss the risk to
their offspring of inheriting an expanded full-mutation fragile X allele and to discuss
fragile X-associated disorders (premature ovarian insufficiency and fragile X
tremor/ataxia syndrome).
Prenatal diagnostic testing for fragile X syndrome should be offered to known carriers of
the fragile X premutation or full mutation.
DNA-based molecular analysis (eg, Southern blot analysis and polymerase chain
reaction) is the preferred method of diagnosis of fragile X syndrome and of determining
FMR1 triplet repeat number (eg, premutations). In rare cases, the size of the triplet repeat
and the methylation status do not correlate, which makes it difficult to predict the clinical
phenotype. In cases of this discordance, the patient should be referred to a genetics
professional.
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American College of Medical Genetics and Genomics (ACMG)
ACMG published practice guidelines for carrier screening for Fragile X syndrome (2005), which
recommended that Fragile X syndrome carrier testing should be offered to individuals with the
following:
● Individuals seeking reproductive counseling who have (a) a family history of fragile X
syndrome or (b) a family history of undiagnosed mental retardation.
● Women who are experiencing reproductive or fertility problems associated with elevated
follicle stimulating hormone (FSH) levels, especially if they have (a) a family history of
premature ovarian failure, (b) a family history of fragile X syndrome, or (c) male or
female relatives with undiagnosed mental retardation. (p. 586)
Hemoglobinopathy Carrier Screening - HBA1, HBA2, or HBB Sequencing and/or
Deletion/Duplication Analysis
American College of Obstetricians and Gynecologists (ACOG)
ACOG published practice bulletin No. 691 (March 2017, reaffirmed 2020) and following
recommendations related to carrier screening (p. 2):
● A complete blood count with red blood cell indices should be performed in all women
who are currently pregnant to assess not only their risk of anemia but also to allow
assessment for risk of a hemoglobinopathy. Ideally, this testing also should be offered to
women before pregnancy.
A hemoglobin electrophoresis should be performed in addition to a complete blood count
if there is suspicion of hemoglobinopathy based on ethnicity (African, Mediterranean,
Middle Eastern, Southeast Asian, or West Indian descent). If red blood cell indices
indicate a low mean corpuscular hemoglobin or mean corpuscular volume, hemoglobin
electrophoresis also should be performed.
●
Ashkenazi Jewish Carrier Panel Testing
American College of Obstetricians and Gynecologists (ACOG) and American College of
Medical Genetics and Genomics (ACMG)
ACMG and ACOG published practice guidelines for carrier screening in individuals of
Ashkenazi Jewish descent (2008) which made the following recommendations:
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● We recommend that carrier screening for cystic fibrosis, Canavan disease, familial
dysautonomia, and Tay-Sachs disease be offered to all Ashkenazi Jews who are pregnant
or considering pregnancy, according to current American College of Medical Genetics
and/or the American College of Obstetricians and Gynecologists (ACOG) guidelines. In
addition, we recommend that carrier screening be offered for Fanconi anemia (Group C),
Niemann-Pick (Type A), Bloom syndrome, mucolipidosis IV, and Gaucher disease.
Carrier screening for these disorders should include testing for the specific mutations
listed [in Table 1], which will result in a carrier detection rate 95% for most disorders. As
a result, even in disorders that are relatively less common, expected mutation-specific
carrier frequencies are relatively high.
● If only one member of a couple is of Ashkenazi Jewish background, testing should still
be offered. Ideally, the Jewish member of the couple should be tested first. If the Jewish
partner has a positive test result, the other partner (regardless of background) should be
screened for that particular disorder. In the case of Tay-Sachs disease, testing can be
performed using the biochemical assay, which has an excellent detection rate regardless
of ethnic or racial background. The mutation detection rate and carrier frequency among
different ethnic/racial groups is known for cystic fibrosis; however, for the other
disorders, a discussion should include the lack of a precise residual risk in the case where
the non-Jewish partner is negative on mutation analysis.
● Generally, individuals self-identify themselves as Jewish and whether or not they are of
eastern European origin. One Jewish grandparent is sufficient to offer testing. However,
if someone is unsure as to their precise lineage, it is recommended to offer testing. At this
time, there is no specific panel of tests available for Jews from non-Ashkenazi
background. However, a proper family history and ethnic origin should still be obtained
and appropriate testing offered (e.g., hemoglobinopathy screening for those from the
Mediterranean basin).
● In the case where someone is identified as a carrier, genetic counseling should be readily
available to discuss the findings and possible reproductive options. Furthermore, a
discussion regarding the importance of genetic counseling for other family members
should be stressed. Although the provider cannot contact family members directly, the
individual should be encouraged to discuss the findings with his or her family if possible
and appropriate. (p. 54 to 56)
American College of Obstetricians and Gynecologists (ACOG)
ACOG published practice bulletin No. 691 (March 2017, reaffirmed 2020) and following
recommendations related to carrier screening (p. 3):
When only one partner is of Ashkenazi Jewish descent, that individual should be offered
screening first. If it is determined that this individual is a carrier, the other partner should
be offered screening. However, the couple should be informed that the carrier frequency
and the detection rate in non-Jewish individuals are unknown for most of these disorders,
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except for Tay–Sachs disease and cystic fibrosis. Therefore, it is difficult to accurately
predict the couple’s risk of having a child with the disorder.
Duchenne and Becker Muscular Dystrophy Carrier Screening
DMD Targeted Variant Analysis
GeneReviews: Dystrophinopathies
GeneReviews is an expert-authored review of current literature on a genetic disease and goes
through a rigorous editing and peer review process before being published online. The
recommendation for DMD testing strategy is as follows:
Because the majority of pathogenic variants involve deletions of one or more exons, gene-
targeted deletion/duplication analysis of DMD is performed first and followed by sequence
analysis if no pathogenic variant is found.
DMD Sequencing and/or Deletion/Duplication Analysis
European Molecular Genetics Quality Network (EMQN)
EMQN published best practice guidelines for genetic testing in dystrophinopathies (2020), which
included the following in regard to carrier testing in females (p. 1147):
● When the familial pathogenic variant is known, carrier testing should be undertaken by
●
specific testing for this variant.
When the familial pathogenic variant is unknown and an affected male is not available to
be tested, female relatives at risk of being carriers should be offered the full cohort of
level 1 and 2 genetic testing (i.e. CNV analysis and sequencing) since these two
approaches are cost effective and offer ~99% sensitivity.
General Criteria for Targeted Carrier Screening
American College of Obstetricians and Gynecologists (ACOG)
ACOG published practice bulletin No. 690 (March 2017, reaffirmed 2020) and following
recommendations related to carrier screening:
● Given the multitude of conditions that can be included in expanded carrier screening
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panels, the disorders selected for inclusion should meet several of the following
consensus-determined criteria: have a carrier frequency of 1 in 100 or greater, have a
well-defined phenotype, have a detrimental effect on quality of life, cause cognitive or
physical impairment, require surgical or medical intervention, or have an onset early in
life. Additionally, screened conditions should be able to be diagnosed prenatally and may
afford opportunities for antenatal intervention to improve perinatal outcomes, changes to
delivery management to optimize newborn and infant outcomes, and education of the
parents about special care needs after birth.
● Carrier screening panels should not include conditions primarily associated with a disease
of adult onset. (p. e36)
ACOG published practice bulletin No. 691 (March 2017) and following recommendations
related to carrier screening
● Carrier screening is a term used to describe genetic testing that is performed on an
individual who does not have any overt phenotype for a genetic disorder but may have
one variant allele within a gene(s) associated with a diagnosis.
Information about carrier screening should be provided to every pregnant woman.
Carrier screening and counseling ideally should be performed before pregnancy because
this enables couples to learn about their reproductive risk and consider the most complete
range of reproductive options. A patient may decline any or all screening.
When an individual is found to be a carrier for a genetic condition, his or her relatives
are at risk of carrying the same mutation. The patient should be encouraged to inform his
or her relatives of the risk and the availability of carrier screening.
If an individual is found to be a carrier for a specific condition, the patient’s reproductive
partner should be offered testing in order to receive informed genetic counseling about
potential reproductive outcomes.
If both partners are found to be carriers of a genetic condition, genetic counseling should
be offered. (p. 597)
●
●
●
●
●
National Society of Genetic Counselors (NSGC):
The National Society of Genetic Counselors updated a position statement (2018) regarding the
genetic testing of minors for adult-onset conditions, stating the following:
[NSGC] encourages deferring predictive genetic testing of minors for adult-onset
conditions when results will not impact childhood medical management or significantly
benefit the child. Predictive testing should optimally be deferred until the individual has
the capacity to weigh the associated risks, benefits, and limitations of this information,
taking his/her circumstances, preferences, and beliefs into account to preserve his/her
autonomy and right to an open future.
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Reviews, Revisions, and Approvals
Policy developed
REFERENCES
Revision
Date
03/23
Approval
Date
03/23
1. Langfelder-Schwind E, Karczeski B, Strecker MN, et al. Molecular Testing for Cystic
Fibrosis Carrier Status Practice Guidelines: Recommendations of the National Society of
Genetic Counselors. J Genet Couns. 2014;23(1):5-15. doi:10.1007/s10897-013-9636-9
2. Deignan JL, Astbury C, Cutting GR, et al. CFTR variant testing: a technical standard of
the American College of Medical Genetics and Genomics (ACMG). Genet Med.
2020;22(8):1288-1295. doi:10.1038/s41436-020-0822-5
3. “Genetic Testing of Minors for Adult-Onset Condition”. Position Statement from
National Society for Genetic Counselors. https://www.nsgc.org/Policy-Research-and-
Publications/Position-Statements/Position-Statements/Post/genetic-testing-of-minors-for-
adult-onset-
conditions#:~:text=The%20National%20Society%20of%20Genetic,or%20significantly%
20benefit%20the%20child. Released October 9, 2018. Updated June 26, 2019.
4. Committee Opinion No. 690: Carrier Screening in the Age of Genomic Medicine. Obstet
Gynecol. 2017;129(3):e35-e40. doi:10.1097/AOG.0000000000001951
5. Committee Opinion No. 691 Summary: Carrier Screening for Genetic Conditions. Obstet
Gynecol. 2017;129(3):597-599. doi:10.1097/AOG.0000000000001948
6. Gregg AR, Aarabi M, Klugman S, et al. Screening for autosomal recessive and X-linked
conditions during pregnancy and preconception: a practice resource of the American
College of Medical Genetics and Genomics (ACMG) [published online ahead of print,
2021 Jul 20] [published correction appears in Genet Med. 2021 Aug 27;:]. Genet Med.
2021;10.1038/s41436-021-01203-z. doi:10.1038/s41436-021-01203-z
7. Edwards JG, Feldman G, Goldberg J, et al. Expanded Carrier Screening in Reproductive
Medicine—Points to Consider. Obstet Gynecol. 2015;125(3):653-662.
doi:10.1097/AOG.0000000000000666
8. Gross SJ, Pletcher BA, Monaghan KG; Professional Practice and Guidelines Committee.
Carrier screening in individuals of Ashkenazi Jewish descent. Genet Med. 2008;10(1):54-
56. doi:10.1097/GIM.0b013e31815f247c
9. Prior TW; Professional Practice and Guidelines Committee. Carrier screening for spinal
muscular atrophy. Genet Med. 2008;10(11):840-842.
doi:10.1097/GIM.0b013e318188d069
10. Darras BT, Urion DK, Ghosh PS. Dystrophinopathies. 2000 Sep 5 [Updated 2022 Jan
20]. In: Adam MP, Ardinger HH, Pagon RA, et al., editors. GeneReviews® [Internet].
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Concert Genetic Testing: Prenatal and Preconception Carrier Screening
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Date of Last Revision: 3/1/2023
Seattle (WA): University of Washington, Seattle; 1993-20230. Available from:
https://www.ncbi.nlm.nih.gov/books/NBK1119/
11. Fratter C, Dalgleish R, Allen SK, et al. EMQN best practice guidelines for genetic testing
in dystrophinopathies. Eur J Hum Genet. 2020;28(9):1141-1159. doi:10.1038/s41431-
020-0643-7
12. Sherman S, Pletcher BA, Driscoll DA. Fragile X syndrome: diagnostic and carrier
testing. Genet Med. 2005;7(8):584-587. doi:10.1097/01.gim.0000182468.22666.dd
13. Grody WW, Cutting GR, Klinger KW, et al. Laboratory standards and guidelines for
population-based cystic fibrosis carrier screening. Genet Med. 2001;3(2):149-154.
doi:10.1097/00125817-200103000-00010
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Important Reminder
This clinical policy has been developed by appropriately experienced and licensed health care
professionals based on a review and consideration of currently available generally accepted
standards of medical practice; peer-reviewed medical literature; government agency/program
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policies may be developed and adopted as needed, at any time.
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